Adalysis, by default, analyzes only active campaigns. If you'd like to override this, you can do so by doing the following:
1) Create a new label called AdalysisKeepEnabled (case sensitive). You can do so from within the Labels screen.
2) Enable the campaign from within Adalysis and assign the above label to it.
3) Pause the campaign immediately afterward from within Google Ads.
Whenever that label is used, Adalysis will keep the campaign enabled within Adalysis only. The status in Google Ads can change independently of Adalysis.